Cristescu, R., Cahill, V., Sherwin, W. B., Handasyde, K., Carlyon, K., Whisson, D., Herbert, C. A., Carlsson, B. L. J., Wilton, A. N., and Cooper, D. W.: Inbreeding and testicular abnormalities in a bottlenecked population of koalas (
Phascolarctos cinereus), Wildl. Res., 36, 299–308, 2009.
Emmins, J. J.: The Victorian koala: Genetic heterogeneity, immune reponsiveness and epizootiology of Chlamydiosis, Doctor of Philosophy, Depatment of Pathology and Immunology, Monash University, Melbourne, Victoria, 346 pp., 1996.
Fabbri, E., Caniglia, R., Mucci, N., Thomsen, H. P., Krag, K., Pertoldi, C., Loeschcke, V., and Randi, E.: Comparison of single nucleotide polymorphisms and microsatellites in non-invasive genetic monitoring of a wolf population, Arch. Biol. Sci., 64, 321–335, 2012.
Fowler, E. V., Houlden, B. A., Hoeben, P., and Timms, P.: Genetic diversity and gene flow among southeastern Queensland koalas (
Phascolarctos cinereus), Mol. Ecol., 9, 155–164, 2000.
Galpern, P., Manseau, M., Hettinga, P., Smith, K., and Wilson, P.: Allelematch: an R package for identifying unique multilocus genotypes where genotyping error and missing data may be present, Mol. Ecol. Resour., 12, 771–778, 2012.
Garbe, J. and Da, Y.: Pedigraph: a software tool for the graphing and analysis of large complex pedigree: User manual Version 2.4, Department of Animal Science, University of Minnesota, 2008.
Hammerly, S., Cerda, D., Bailey, H., and Johnson, J.: A pedigree gone bad: increased offspring survival after using DNA-based relatedness to minimize inbreeding in a captive population, Anim. Conserv., 19, 296–303, 2016.
Houlden, B. A., England, P. R., Taylor, A. C., Greville, W. D., and Sherwin, W. B.: Low genetic variability of the koala
Phascolarctos cinereus in south-eastern Australia following a severe population bottleneck, Mol. Ecol., 5, 269–281, 1996.
Houlden, B. A., Costello, B. H., Sharkey, D., Fowler, E. V., Melzer, A., Ellis, W., Carrick, F., Baverstock, P. R., and Elphinstone, M. S.: Phylogeographic differentiation in the mitochondrial control region in the koala,
Phascolarctos cinereus (Goldfuss 1817), Mol. Ecol., 8, 999–1011, 1999.
Ivy, J. A., Miller, A., Lacy, R. C., and DeWoody, J. A.: Methods and prospects for using molecular data in captive breeding programs: an empirical example using parma wallabies (
Macropus parma), J. Hered., 100, 441–454, 2009.
Lee, T., Zenger, K. R., Close, R. L., and Phalen, D. N.: Genetic analysis reveals a distinct and highly diverse koala (
Phascolarctos cinereus) population in South Gippsland, Victoria, Australia, Aust. Mammal., 34, 68–74, 2011.
Ley, R. E., Lozupone, C. A., Hamady, M., Knight, R., and Gordon, J. I.: Worlds within worlds: evolution of the vertebrate gut microbiota, Nat. Rev. Microbiol., 6, 776–788, 2008.
Loebel, D., Longhurst, T., and Johnston, P.: Full-length cDNA sequence of X-linked G6PD of an Australian marsupial, the wallaroo, Mamm. Genome, 6, 198–201, 1995.
Loebel, D. A. and Johnston, P. G.: Analysis of the intron-exon structure of the G6PD gene of the wallaroo (
Macropus robustus) by polymerase chain reaction, Mamm. Genome, 8, 146–147, 1997.
Morrissey, M. B. and Wilson, A. J.: PEDANTICS: an R package for pedigree-based genetic simulation and pedigree manipulation, characterization and viewing, Mol. Ecol. Resour., 10, 711–719, 2010.
Neaves, L. E., Frankham, G. J., Dennison, S., FitzGibbon, S., Flannagan, C., Gillett, A., Hynes, E., Handasyde, K., Helgen, K. M., and Tsangaras, K.: Phylogeography of the Koala (
Phascolarctos cinereus) and Harmonising Data to Inform Conservation, PloS one, 11, e0162207, https://doi.org/10.1371/journal.pone.0162207, 2016.
Paetkau, D.: An empirical exploration of data quality in DNA-based population inventories, Mol. Ecol., 12, 1375–1387, 2003.
Peakall, R. and Smouse, P. E.: GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research – an update, Bioinformatics, 28, 2537–2539, 2012.
Piggott, M., Banks, S., and Taylor, A.: Population structure of brush-tailed rock-wallaby (
Petrogale penicillata) colonies inferred from analysis of faecal DNA, Mol. Ecol., 15, 93–105, 2006.
Pompanon, F., Bonin, A., Bellemain, E., and Taberlet, P.: Genotyping errors: causes, consequences and solutions, Nat. Rev. Genet., 6, 847–846, 2005.
R Core Team: R: A language and environment for statistical computing, R Foundation for Statistical Computing, Vienna, Austria, 2014.
Selkoe, K. A. and Toonen, R. J.: Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers, Ecol. Lett., 9, 615–629, 2006.
Snyder-Mackler, N., Majoros, W. H., Yuan, M. L., Shaver, A. O., Gordon, J. B., Kopp, G. H., Schlebusch, S. A., Wall, J. D., Alberts, S. C., Mukherjee, S., Zhou, X., and Tung, J.: Efficient genome-wide sequencing and low-coverage pedigree analysis from noninvasively collected samples, Genetics, 203, 699–714, 2016.
Stenglein, J. L., Waits, L. P., Ausband, D. E., Zager, P., and Mack, C. M.: Estimating gray wolf pack size and family relationships using noninvasive genetic sampling at rendezvous sites, J. Mammal., 92, 784–795, 2011.
Taberlet, P., Griffin, S., Goossens, B., Questiau, S., Manceau, V., Escaravage, N., Waits, L. P., and Bouvet, J.: Reliable genotyping of samples with very low DNA quantities using PCR, Nucleic Acids Res., 24, 3189–3194, 1996.
Taberlet, P., Camarra, J. J., Griffin, S., Uhrès, E., Hanotte, O., Waits, L. P., Dubois-Paganon, C., Burke, T., and Bouvet, J.: Noninvasive genetic tracking of the endangered Pyrenean brown bear population, Mol. Ecol., 6, 869–876, 1997.
Tamura, K., Stecher, G., Peterson, D., Filipski, A., and Kumar, S.: MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0, Mol. Biol. Evol., 30, 2725–2729, 2013.
Valière, N.: GIMLET: a computer program for analysing genetic individual identification data, Mol. Ecol. Notes, 2, 377–379, 2002.
Valière, N., Bonenfant, C., Toïgo, C., Luikart, G., Gaillard, J.-M., and Klein, F.: Importance of a pilot study for non-invasive genetic sampling: genotyping errors and population size estimation in red deer, Conserv. Genet., 8, 69–78, 2007.
Van Oosterhout, C., Hutchinson, W. F., Wills, D. P. M., and Shipley, P.: MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data, Mol. Ecol. Notes, 4, 535–538, 2004.
Wedrowicz, F., Karsa, M., Mosse, J., and Hogan, F. E.: Reliable genotyping of the koala (
Phascolarctos cinereus) using DNA isolated from a single faecal pellet, Mol. Ecol. Resour., 13, 634–641, 2013.
Woods, J. G., Paetkau, D., Lewis, D., McLellan, B. N., Proctor, M., and Strobeck, C.: Genetic tagging of free-ranging black and brown bears, Wildl. Soc. Bull., 27, 616–627, 1999.
