Articles | Volume 26, issue 1
https://doi.org/10.5194/we-26-47-2026
© Author(s) 2026. This work is distributed under the Creative Commons Attribution 4.0 License.
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04 Mar 2026
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| 04 Mar 2026
| 04 Mar 2026
Decoding fungal communities: ITS extraction matters more than ASVs vs. OTUs
Cited articles
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Angly, F. E., Willner, D., Rohwer, F., Hugenholtz, P., and Tyson, G. W.: Grinder: a versatile amplicon and shotgun sequence simulator, Nucleic Acids Res., 40, e94, https://doi.org/10.1093/nar/gks251, 2012.
Aronesty, E.: Comparison of sequencing utility programs, Open Bioinforma. J., 7, 1–8, https://doi.org/10.2174/1875036201307010001, 2013.
Bengtsson-Palme, J., Ryberg, M., Hartmann, M., Branco, S., Wang, Z., Godhe, A., De Wit, P., Sánchez-García, M., Ebersberger, I., de Sousa, F., Amend, A. S., Jumpponen, A., Unterseher, M., Kristiansson, E., Abarenkov, K., Bertrand, Y. J. K., Sanli, K., Eriksson, K. M., Vik, U., Veldre, V., and Nilsson, R. H.: Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data, Methods Ecol. Evol., https://doi.org/10.1111/2041-210X.12073, 2013.
Blaalid, R., Kumar, S., Nilsson, R. H., Abarenkov, K., Kirk, P. M., and Kauserud, H.: ITS1 versus ITS2 as DNA metabarcodes for fungi, Mol. Ecol. Resour., 13, 218–224, https://doi.org/10.1111/1755-0998.12065, 2013.
